* chore: fix mock typing in packages/api tests
* chore: improve imports, type handling and method signatures for MCPServersRegistry
* chore: use enum in migration scripts
* chore: ParsedServerConfig type to enhance server configuration handling
* feat: Implement agent permissions migration check and logging
* feat: Integrate migration checks into server initialization process
* feat: Add prompt permissions migration check and logging to server initialization
* chore: move prompt formatting functions to dedicated prompts dir
feat: Refactor prompt and prompt group schemas; move types to separate file
feat: Implement paginated access to prompt groups with filtering and public visibility
refactor: Add PromptGroups context provider and integrate it into relevant components
refactor: Optimize filter change handling and query invalidation in usePromptGroupsNav hook
refactor: Simplify context usage in FilterPrompts and GroupSidePanel components
