✨ feat: Add MCP Reinitialization to MCPPanel (#8418)

* ✨ feat: Add MCP Reinitialization to MCPPanel

- Refactored tool caching to include user-specific tools in various service files.
- Refactored MCPManager class for clarity
- Added a new endpoint for reinitializing MCP servers, allowing for dynamic updates of server configurations.
- Enhanced the MCPPanel component to support server reinitialization with user feedback.

* 🔃 refactor: Simplify Plugin Deduplication and Clear Cache Post-MCP Initialization

- Replaced manual deduplication of tools with the dedicated `filterUniquePlugins` function for improved readability.
- Added back cache clearing for tools after MCP initialization to ensure fresh data is used.
- Removed unused exports from `PluginController.js` to clean up the codebase.

api/server/index.js

@@ -16,7 +16,7 @@ const { connectDb, indexSync } = require('~/db');
 const validateImageRequest = require('./middleware/validateImageRequest');
 const { jwtLogin, ldapLogin, passportLogin } = require('~/strategies');
 const errorController = require('./controllers/ErrorController');
-const initializeMCP = require('./services/initializeMCP');
+const initializeMCPs = require('./services/initializeMCPs');
 const configureSocialLogins = require('./socialLogins');
 const AppService = require('./services/AppService');
 const staticCache = require('./utils/staticCache');
@@ -146,7 +146,7 @@ const startServer = async () => {
       logger.info(`Server listening at http://${host == '0.0.0.0' ? 'localhost' : host}:${port}`);
     }
 
-    initializeMCP(app);
+    initializeMCPs(app);
   });
 };